Infectious Diseases
Sexually Transmitted Infections
Use exposure-site testing, syndrome-directed empiric treatment when indicated, pregnancy-specific screening, partner management, and targeted prevention to interrupt transmission while preventing pelvic inflammatory disease, adverse pregnancy outcomes, and neonatal infection.
First encounter
Triage urgent syndromes and test the exposed sites
Use symptoms and anatomy to select immediate testing and empiric coverage.
Prioritize same-day evaluation for pelvic or lower-abdominal pain with concern for pelvic inflammatory disease, pregnancy with suspected or confirmed STI, acute proctitis, genital ulceration, ocular symptoms after sexual exposure, sexual assault, and possible disseminated infection. Untreated STIs in women are associated with pelvic inflammatory disease, infertility, chronic pelvic pain, ectopic pregnancy, pregnancy loss, stillbirth, and neonatal transmission. PubMed+1PubMedClinical Updates in Sexually Transmitted Infections, 2024PubMedSexually Transmitted Infections - StatPearls - NCBI Bookshelf
Take a site-specific sexual exposure history rather than inferring exposure from identity: urethral/penile, vaginal/cervical, rectal, pharyngeal, ocular, and skin-to-skin exposure. Obtain NAAT specimens from each exposed mucosal site for gonorrhea and chlamydia when testing is indicated; NAATs are the diagnostic standard and have reported sensitivity and specificity of 95% to 99%. Extragenital infection is frequently asymptomatic, so urine-only testing can miss rectal or pharyngeal infection. Wiley+1WileyDiagnosing sexually transmitted infections in resourceScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirect
For symptomatic patients, add HIV testing and testing for other prevalent STIs at the same encounter. In patients with urethritis, cervicitis, proctitis, pharyngitis, vaginitis, or genital lesions, interpret a positive organism-specific test in an anatomic and syndromic context because concurrent infection with more than one pathogen is common. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectPubMedSexually Transmitted Infections - StatPearls - NCBI Bookshelf
Urethritis: test for gonorrhea and chlamydia; consider other sexually transmitted causes when symptoms persist despite initial management. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectPubMedClinical Updates in Sexually Transmitted Infections, 2024
Cervicitis or vaginal symptoms: distinguish cervicitis from vaginitis and test for gonorrhea and chlamydia; include trichomoniasis and other causes when indicated by the clinical syndrome. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectPubMedClinical Updates in Sexually Transmitted Infections, 2024
Proctitis: obtain rectal gonorrhea and chlamydia testing and assess for syphilis, herpes simplex virus, and lymphogranuloma venereum when the clinical pattern suggests these diagnoses. ScienceDirectScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirect
Pharyngitis after oral exposure: obtain pharyngeal gonorrhea and chlamydia testing when exposure history supports testing; many extragenital infections are asymptomatic. ScienceDirectScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirect
Genital ulcer disease: evaluate for syphilis and herpes simplex virus rather than assigning a diagnosis by lesion morphology alone. PubMedPubMedClinical Updates in Sexually Transmitted Infections, 2024
Cause-directed care
Match treatment to the organism and syndrome
Avoid a single empiric regimen for all mucosal complaints.
Gonorrhea, chlamydia, syphilis, trichomoniasis, Mycoplasma genitalium, herpes simplex virus, lymphogranuloma venereum, and noninfectious conditions can produce overlapping urethral, cervical, rectal, pharyngeal, and genital symptoms. When quality-assured molecular testing is available, use laboratory-supported diagnosis to select current evidence-based treatment rather than relying on syndromic management alone. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectWHOSexually transmitted infections (STIs)
Use the current CDC STI treatment guideline or its current updates to select organism-specific regimen, dose, route, and follow-up because resistance patterns and recommendations change. This is particularly important for gonorrhea, where antimicrobial susceptibility is a continuing clinical and public-health concern, and for persistent Mycoplasma genitalium infection. JAMA+3JAMADiagnosis and Treatment of Sexually Transmitted InfectionsJAMASexually Transmitted InfectionsPubMedClinical Updates in Sexually Transmitted Infections, 2024PubMedSexually Transmitted Infections Treatment Guidelines, 2021
For patients with genital herpes, routine serologic screening is not recommended, including during pregnancy. Evaluate clinically apparent lesions and use the CDC STI treatment guidance for antiviral treatment and counseling. PubMedPubMedClinical Updates in Sexually Transmitted Infections, 2024
Persistent or recurrent symptoms after treatment should trigger reassessment of adherence, re-exposure from an untreated partner, infection at an untested anatomic site, coinfection, and an alternative infectious or noninfectious diagnosis. Do not assume microbiologic failure solely from ongoing symptoms. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectPubMedClinical Updates in Sexually Transmitted Infections, 2024
Use organism-directed treatment after NAAT or serologic confirmation whenever the patient is clinically stable and follow-up is reliable. WHOWHOSexually transmitted infections (STIs)
Use empiric syndromic treatment when clinical severity, likelihood of loss to follow-up, or a high-probability syndrome makes delayed treatment unsafe; obtain diagnostic specimens before treatment whenever feasible. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectPubMedSexual Assault Infectious Disease Prophylaxis - StatPearls - NCBI Bookshelf
At treatment visits, identify and manage sex partners to reduce reinfection and onward transmission. Partner counseling and treatment are core components of STI case management. PubMed+1PubMedUpdates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025WHOSexually Transmitted Infections - IRIS
Document all exposed sites and ensure testing and treatment have addressed those sites; asymptomatic extragenital infection is common. ScienceDirectScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirect
Sexual assault
After sexual assault, use a trauma-informed examination and minimize retraumatization while obtaining indicated baseline testing. Because follow-up adherence is often low, CDC-based guidance recommends presumptive antimicrobial treatment for chlamydia, gonorrhea, and trichomoniasis, plus emergency contraception, hepatitis B and HPV vaccination assessment, and HIV exposure evaluation. PubMedPubMedSexual Assault Infectious Disease Prophylaxis - StatPearls - NCBI Bookshelf
Offer HIV postexposure evaluation promptly when the exposure could confer HIV risk. PubMedPubMedSexual Assault Infectious Disease Prophylaxis - StatPearls - NCBI Bookshelf
Address hepatitis B and HPV immunization status at the initial visit rather than deferring prevention to follow-up. PubMedPubMedSexual Assault Infectious Disease Prophylaxis - StatPearls - NCBI Bookshelf
Asymptomatic infection
Screen by pregnancy status, age, risk, and exposure anatomy
Screening finds infection that symptom-based care routinely misses.
Routine laboratory screening is indicated for sexually active adolescents, and screening strategies should account for age, pregnancy, sexual practices, community prevalence, and disease-specific sequelae. An opt-out approach can reduce dependence on sexual-history disclosure and may improve case detection among adolescents and young adults. PubMed+1PubMedSexually Transmitted Infections Treatment Guidelines, 2021PubMedUpdates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025
During pregnancy, screen at the first prenatal visit according to CDC recommendations. For gonorrhea, screen pregnant patients at risk, including those younger than 25 years and those 25 years or older with a new sex partner, multiple partners, a partner with concurrent partners, a partner with an STI, or residence in a community with high gonorrhea rates. Treat identified infection during pregnancy and retest in 3 months, in the third trimester, or at delivery as indicated. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021
Do not use routine serologic screening for genital herpes in pregnancy. CDC-based pregnancy screening guidance does not recommend routine testing for bacterial vaginosis, herpes, HPV, or trichomoniasis in pregnancy. PubMed+1PubMedClinical Updates in Sexually Transmitted Infections, 2024PubMedSexually Transmitted Infections - StatPearls - NCBI Bookshelf
For persons with ongoing exposure risk, align repeat STI screening with the risk pattern and anatomic exposure sites. In people using doxycycline postexposure prophylaxis, perform syphilis and gonorrhea/chlamydia screening at all sites of exposure every 3 to 6 months. Oxford AcademicOxford AcademicUtilization of Doxycycline Postexposure Prophylaxis at a Midwestern United States HIV/PrEP Clinic | Open Forum Infectious Diseases | Oxford Academic
At prenatal intake, identify age-based and behavioral risk factors that require gonorrhea screening. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021
When infection is diagnosed in pregnancy, ensure partner testing and treatment to reduce reinfection before delivery. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021
Use opt-out screening as a workflow strategy where sexual-history-based testing leaves a substantial testing gap. PubMedPubMedUpdates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025
| Situation | Action | Follow-up |
|---|---|---|
| Pregnant patient younger than 25 years | Screen for gonorrhea at the first prenatal visit. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021 | Treat infection during pregnancy; retest in 3 months, in the third trimester, or at delivery as indicated. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021 |
| Pregnant patient 25 years or older with gonorrhea risk factors | Screen for gonorrhea at the first prenatal visit. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021 | Treat infection and test/treat sex partners; repeat testing as indicated. PubMedPubMedSexually Transmitted Infections Treatment Guidelines, 2021 |
| Pregnant patient without symptoms requesting herpes screening | Do not perform routine genital herpes serologic screening. PubMedPubMedClinical Updates in Sexually Transmitted Infections, 2024 | Evaluate and manage clinically suspected herpes according to current STI guidance. PubMedPubMedClinical Updates in Sexually Transmitted Infections, 2024 |
| Pregnant patient without symptoms requesting routine BV, HPV, or trichomonas testing | Routine testing is not recommended. PubMedPubMedSexually Transmitted Infections - StatPearls - NCBI Bookshelf | Test when symptoms or another clinical indication is present. PubMedPubMedSexually Transmitted Infections - StatPearls - NCBI Bookshelf |
Transmission prevention
Build prevention around barriers, vaccination, HIV prevention, and partner treatment
Pair each STI diagnosis with a prevention and reinfection plan.
Recommend condoms for vaginal, oral, and anal sex; consistent correct use provides effective protection against STIs, including HIV, but does not fully protect against infections transmitted from uncovered ulcerated skin, including syphilis and genital herpes. WHOWHOSexually transmitted infections (STIs)
Review hepatitis B and HPV immunization status. Safe and effective vaccines are available for hepatitis B and HPV, and vaccination should be incorporated into STI prevention visits rather than reserved for primary care follow-up. WHOWHOSexually transmitted infections (STIs)
Use each bacterial STI diagnosis as a prompt to assess HIV testing needs and HIV prevention, including preexposure prophylaxis when risk warrants. All patients presenting with STI symptoms should be screened for HIV and other prevalent STIs. PubMedPubMedSexually Transmitted Infections - StatPearls - NCBI Bookshelf
Address sex partners at the same visit: identify recent partners, facilitate notification, arrange testing and treatment, and counsel patients that untreated partners are a major driver of reinfection. Partner notification and partner treatment are established elements of STI case management. PubMed+1PubMedUpdates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025WHOSexually Transmitted Infections - IRIS
Document a prevention plan that includes barrier use, vaccine status, HIV testing or prevention assessment, and partner management. PubMed+1PubMedSexually Transmitted Infections - StatPearls - NCBI BookshelfWHOSexually transmitted infections (STIs)
For recurrent bacterial STIs, reassess exposure sites and prevention tools rather than limiting the response to repeat antimicrobial treatment. Oxford Academic+1Oxford AcademicUtilization of Doxycycline Postexposure Prophylaxis at a Midwestern United States HIV/PrEP Clinic | Open Forum Infectious Diseases | Oxford AcademicPubMedUpdates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025
Use nonjudgmental, inclusive sexual-history questions to identify exposures that determine site-specific testing and prevention needs. ScienceDirect+1ScienceDirectSexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirectPubMedUpdates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025
Selected bacterial STI prevention
Use doxycycline PEP selectively and monitor for benefit and resistance concerns
Doxycycline PEP is an exposure-linked intervention, not universal prophylaxis.
CDC guidance released in 2024 recommends counseling gay, bisexual, and other men who have sex with men and transgender women with a bacterial STI diagnosed during the past 12 months about doxycycline postexposure prophylaxis and offering it through shared decision-making. The regimen evaluated in trials is doxycycline 200 mg orally within 72 hours after sex. JAMAJAMADoxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIV
Doxycycline PEP has reduced chlamydia and syphilis incidence in trials among persons assigned male sex at birth who were living with HIV or using HIV PrEP; gonorrhea benefit has been less consistent, plausibly reflecting tetracycline resistance in Neisseria gonorrhoeae. JAMA+1JAMADoxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIVNEJMDoes Meningococcal Group B Vaccination in the Setting of DoxyPEP Reduce Incidence of Gonorrhea? | NEJM Clinician
At initiation and every 3 to 6 months, reassess ongoing use, perform syphilis serology and gonorrhea/chlamydia testing at every exposed anatomic site, and test for HIV in persons without HIV according to current recommendations. Prescribe the number of doses through individualized shared decision-making. Oxford AcademicOxford AcademicUtilization of Doxycycline Postexposure Prophylaxis at a Midwestern United States HIV/PrEP Clinic | Open Forum Infectious Diseases | Oxford Academic
Discuss antimicrobial-resistance uncertainty explicitly. Wider doxycycline PEP use may increase resistance selection, including concern about co-transmission of gonococcal cephalosporin resistance with tetracycline resistance; this risk must be balanced against prevention of syphilis and chlamydia. JAMAJAMADoxycycline Postexposure Prophylaxis Could Accelerate the Emergence of Gonococcal Ceftriaxone Resistance—Reply
Eligibility emphasized by CDC: gay, bisexual, and other men who have sex with men and transgender women with a bacterial STI in the preceding 12 months. JAMAJAMADoxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIV
Dose: doxycycline 200 mg orally as soon as possible and within 72 hours after sex. JAMA+1JAMADoxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIVNEJMDoes Meningococcal Group B Vaccination in the Setting of DoxyPEP Reduce Incidence of Gonorrhea? | NEJM Clinician
Monitoring: reassess continuation and complete multisite STI screening every 3 to 6 months. Oxford AcademicOxford AcademicUtilization of Doxycycline Postexposure Prophylaxis at a Midwestern United States HIV/PrEP Clinic | Open Forum Infectious Diseases | Oxford Academic
Do not present doxycycline PEP as a substitute for condoms, HIV prevention assessment, vaccination, or partner management. Oxford Academic+2Oxford AcademicUtilization of Doxycycline Postexposure Prophylaxis at a Midwestern United States HIV/PrEP Clinic | Open Forum Infectious Diseases | Oxford AcademicPubMedSexually Transmitted Infections - StatPearls - NCBI BookshelfWHOSexually transmitted infections (STIs)
References
- Diagnosis and Treatment of Sexually Transmitted Infections — jamanetwork.com · jamanetwork.com
- Sexually Transmitted Infections — jamanetwork.com · jamanetwork.com
- Doxycycline Postexposure Prophylaxis Could Accelerate the Emergence of Gonococcal Ceftriaxone Resistance—Reply — jamanetwork.com · jamanetwork.com
- Doxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIV — jamanetwork.com · jamanetwork.com
- Does Meningococcal Group B Vaccination in the Setting of DoxyPEP Reduce Incidence of Gonorrhea? | NEJM Clinician — clinician.nejm.org · clinician.nejm.org
- Sexually Transmitted Infection Treatment Guidelines for Adolescent Health Providers: What's New in 2021? — www.sciencedirect.com · www.sciencedirect.com
- A Scoping Review of Approaches to Extragenital ... — www.sciencedirect.com · www.sciencedirect.com
- Addressing HIV/Sexually Transmitted Diseases and Pregnancy Prevention Through Schools: An Approach for Strengthening Education, Health Services, and School Environments That Promote Adolescent Sexual Health and Well-Being — www.sciencedirect.com · www.sciencedirect.com
- Diagnosing sexually transmitted infections in resource — onlinelibrary.wiley.com · onlinelibrary.wiley.com
- Sexually Transmitted Infection Prevalence and ... — onlinelibrary.wiley.com · onlinelibrary.wiley.com
- Sexually transmitted causes of urethritis, proctitis, pharyngitis, vaginitis and cervicitis - ScienceDirect — www.sciencedirect.com · www.sciencedirect.com
- Utilization of Doxycycline Postexposure Prophylaxis at a Midwestern United States HIV/PrEP Clinic | Open Forum Infectious Diseases | Oxford Academic — academic.oup.com · academic.oup.com
- January 2026 - Volume 53 - Issue 1 : Sexually Transmitted Diseases — journals.lww.com · journals.lww.com
- Filling in the Gaps: Updates on Doxycycline Prophylaxis for Bacterial Sexually Transmitted Infections | Clinical Infectious Diseases | Oxford Academic — academic.oup.com · academic.oup.com
- Clinical Updates in Sexually Transmitted Infections, 2024 — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- Updates on Testing, Treatment, and Prevention of Sexually Transmitted Infections in the United States, 2025 — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- Sexually Transmitted Infections - StatPearls - NCBI Bookshelf — www.ncbi.nlm.nih.gov · www.ncbi.nlm.nih.gov
- Sexually Transmitted Infections Treatment Guidelines, 2021 — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- WHO expands guidance on sexually transmitted infections and reviews country progress on policy implementation — www.who.int · www.who.int
- Sexual Assault Infectious Disease Prophylaxis - StatPearls - NCBI Bookshelf — www.ncbi.nlm.nih.gov · www.ncbi.nlm.nih.gov
- Sexually Transmitted Infections - IRIS — iris.who.int · iris.who.int
- STIs guidelines — www.who.int · www.who.int
- SEXUALLY TRANSMITTED INFECTIONS AMONG ... - IRIS — iris.who.int · iris.who.int
- Sexually transmitted infections (STIs) — www.who.int · www.who.int