Cancer Genetics
Lynch Syndrome
Use universal colorectal and endometrial tumor mismatch-repair testing to identify candidates for germline evaluation, distinguish sporadic MLH1-deficient tumors, and implement gene-informed colonoscopic surveillance, cascade testing, and gynecologic risk reduction.
Case Finding
Identify Lynch syndrome through tumor-first testing
Do not rely on pedigree criteria as the sole gatekeeper for evaluation.
Order mismatch-repair (MMR) protein immunohistochemistry (IHC) and/or microsatellite-instability (MSI) testing for newly diagnosed colorectal cancer. Universal tumor screening detects cases that age- and family-history criteria miss; Amsterdam and revised Bethesda criteria have important sensitivity and specificity limitations. PubMed+1PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfPubMedGenetics of Colorectal Cancer (PDQ®) - PDQ Cancer Information Summaries - NCBI Bookshelf
Apply the same tumor-testing framework to endometrial carcinoma when feasible. Tumor-testing strategies are established for colorectal and endometrial cancers, whereas evidence for routine application to other Lynch-spectrum tumors is more limited. PubMedPubMedLynch Syndrome - GeneReviews® - NCBI Bookshelf
Trigger genetics referral and germline testing when tumor findings suggest inherited MMR deficiency, when a patient has a personal or family pattern of Lynch-spectrum cancers, or when the clinical probability remains concerning despite nondiagnostic tumor testing. Lynch-associated tumors include colorectal, endometrial, ovarian, gastric, small-bowel, pancreatic, biliary tract, upper urinary tract, bladder, prostate, brain, and sebaceous skin tumors. PubMed+2PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDCPubMedDiagnosis of Lynch Syndrome and Strategies to Distinguish Lynch-Related Tumors from Sporadic MSI/dMMR Tumors
Obtain a three-generation pedigree that records cancer site and age at diagnosis; prioritize colorectal, endometrial, ovarian, gastric, small-bowel, upper urinary tract, pancreatic, biliary, brain, prostate, and sebaceous neoplasms. PubMed+2PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDCPubMedDiagnosis of Lynch Syndrome and Strategies to Distinguish Lynch-Related Tumors from Sporadic MSI/dMMR Tumors
Test an affected relative's tumor before testing unaffected relatives whenever available, because tumor results direct the appropriate germline analysis. PubMed+1PubMedLynch Syndrome - GeneReviews® - NCBI BookshelfPubMedGenetics of Colorectal Cancer (PDQ®) - PDQ Cancer Information Summaries - NCBI Bookshelf
Do not use a normal family history to exclude Lynch syndrome from a patient with a newly diagnosed colorectal cancer. Universal screening is designed to identify carriers outside classic clinical criteria. PubMed+1PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfPubMedGenetics of Colorectal Cancer (PDQ®) - PDQ Cancer Information Summaries - NCBI Bookshelf
Diagnostic Branching
Separate sporadic MLH1 deficiency from inherited MMR deficiency
The MLH1/PMS2-loss branch requires an additional somatic workup before assigning inherited risk.
MMR IHC identifies loss of the MLH1, MSH2, MSH6, or PMS2 protein products; MSI testing identifies the genomic instability caused by MMR dysfunction. Either abnormality establishes MMR deficiency but does not by itself establish Lynch syndrome, because sporadic colorectal cancers can be MSI-high or MMR-deficient through acquired MLH1 methylation. PubMed+1PubMedTumour MLH1 promoter region methylation testing is an effective pre-screen for Lynch Syndrome (HNPCC) - PMCPubMedGenetic Testing for Lynch Syndrome, an Inherited Cancer of the Bowel, Endometrium, and Ovary
In colorectal cancer with MLH1/PMS2 loss, a positive BRAF V600E result supports a sporadic MLH1-deficient tumor. MLH1 promoter methylation similarly supports acquired MLH1 silencing; when BRAF is negative and MLH1 methylation is absent, proceed to germline testing for Lynch syndrome. PubMed+2PubMedLynch Syndrome - GeneReviews® - NCBI BookshelfPubMedGenetic Testing for Lynch Syndrome, an Inherited Cancer of the Bowel, Endometrium, and OvaryPubMedA Review of Hereditary Colorectal Cancers - StatPearls - NCBI Bookshelf
Do not extrapolate BRAF triage to endometrial cancer or other tumors. For noncolorectal tumors with MLH1 loss, MLH1 promoter methylation is the relevant tumor assay in the supplied testing framework. PubMedPubMedLynch Syndrome - GeneReviews® - NCBI Bookshelf
Interpret MSI and IHC as complementary rather than interchangeable when suspicion is high. MSI sensitivity is reported as lower for MSH6 and PMS2 carriers than for MLH1 and MSH2 carriers, making IHC particularly useful in the MSH6/PMS2 branch. PubMedPubMedTumour MLH1 promoter region methylation testing is an effective pre-screen for Lynch Syndrome (HNPCC) - PMC
If IHC shows isolated PMS2 loss, do not dismiss Lynch syndrome because PMS2-associated cancer risks are lower than those associated with some other MMR genes. NEJM+1NEJMCancer Risk with the Lynch Syndrome PMS2 Gene | NEJM ClinicianPubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI Bookshelf
If tumor testing is abnormal but germline testing is negative, retain oncology-directed interpretation of the tumor's MMR status and reassess whether additional tumor or hereditary cancer evaluation is warranted based on the clinical context. PubMed+1PubMedLynch Syndrome - GeneReviews® - NCBI BookshelfPubMedDiagnosis of Lynch Syndrome and Strategies to Distinguish Lynch-Related Tumors from Sporadic MSI/dMMR Tumors
Document the exact germline pathogenic variant when identified; cancer risks and management discussions vary by MLH1, MSH2, MSH6, PMS2, and EPCAM pathway. NEJM+2NEJMCancer Risk with the Lynch Syndrome PMS2 Gene | NEJM ClinicianNatureRisk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report | Genetics in MedicinePubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI Bookshelf
Germline Diagnosis
Confirm the inherited diagnosis and extend testing to relatives
A pathogenic germline variant changes surveillance for the patient and targeted testing for relatives.
Confirm Lynch syndrome by identifying a germline pathogenic variant in MLH1, MSH2, MSH6, PMS2, or EPCAM-associated MSH2 pathway disease after pretest counseling. Lynch syndrome is autosomal dominant; once the familial pathogenic variant is known, offer targeted testing to biologic relatives rather than broad, untargeted testing. NEJM+1NEJMCancer Risk with the Lynch Syndrome PMS2 Gene | NEJM ClinicianPubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI Bookshelf
Use the family's identified variant to distinguish relatives who need Lynch-specific prevention from those who do not carry that familial pathogenic variant. Cascade testing is clinically consequential because intensive colonoscopic surveillance and gynecologic risk-reduction decisions should be concentrated in confirmed carriers. CDC+1CDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDCPubMedLynch Syndrome - GeneReviews® - NCBI Bookshelf
Treat gene identity as a risk modifier rather than a reason to abandon surveillance. MSH6 and PMS2 variants generally confer lower risks of colorectal and other Lynch-associated malignancies than MLH1 or MSH2 variants, and PMS2 variants are associated with reduced endometrial and ovarian risk, but affected carriers still require individualized prevention planning. NEJM+1NEJMCancer Risk with the Lynch Syndrome PMS2 Gene | NEJM ClinicianPubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI Bookshelf
Record prior colorectal, endometrial, ovarian, and other Lynch-spectrum cancers before choosing surveillance and preventive surgery discussions. PubMed+1PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
Assess reproductive plans before recommending hysterectomy or oophorectomy; risk-reducing gynecologic surgery is generally considered after completion of childbearing. NEJM+1NEJMProphylactic Surgery to Reduce the Risk of Gynecologic Cancers in the Lynch Syndrome | New England Journal of MedicineNatureLynch Syndrome and Gynecological Cancer Prevention | Cancer Genetics | Oncology and Carcinogenesis | Health sciences | Topics | Nature Index
Coordinate genetic counseling with gastroenterology, gynecology or gynecologic oncology, and the treating oncologist when cancer is already present. NEJM+1NEJMProphylactic Surgery to Reduce the Risk of Gynecologic Cancers in the Lynch Syndrome | New England Journal of MedicineCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
Core Prevention
Use frequent colonoscopy to prevent and detect colorectal cancer
Colonoscopy is the primary actionable intervention for confirmed carriers.
Schedule colonoscopy every 1 to 2 years for confirmed Lynch syndrome carriers. The CDC advises beginning 2 to 5 years before the earliest colorectal cancer diagnosis in the family; European guidance cited in the evidence base uses 1- to 2-year intervals and gene-specific starting ages. nice org uk+1nice org uk[PDF] national institute for health and care - NICECDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
Where using the cited gene-stratified protocol, begin at age 25 years for MLH1, MSH2, or EPCAM pathogenic-variant carriers and at age 30 years for MSH6 or PMS2 carriers; continue to age 75 years, then reassess. Earlier initiation is warranted when the family’s earliest colorectal cancer occurred before the applicable age threshold. nice org uknice org uk[PDF] national institute for health and care - NICE
Remove polyps during colonoscopy rather than treating surveillance as diagnostic observation alone. Lynch-associated colorectal neoplasia is often right-sided and may include flat premalignant lesions, supporting meticulous total-colon examination. CDC+1CDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDCPubMedA Review of Hereditary Colorectal Cancers - StatPearls - NCBI Bookshelf
Discuss aspirin chemoprevention as a separate shared decision rather than substituting it for colonoscopy. Long-term CAPP2 follow-up is cited as evidence for cancer prevention with aspirin in Lynch syndrome, but the excerpts do not establish a U.S. standard dose; a cited NICE scope notes that 75 to 300 mg is commonly offered outside the trial context. NEJM+2NEJMCancer Risk with the Lynch Syndrome PMS2 Gene | NEJM ClinicianNatureRisk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report | Genetics in Medicinenice org uk[PDF] national institute for health and care - NICE
At each surveillance visit, document interval colorectal symptoms, quality and completeness of the prior examination, polyp pathology, and the date of the next colonoscopy. CDC+1CDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDCPubMedA Review of Hereditary Colorectal Cancers - StatPearls - NCBI Bookshelf
Do not lengthen the interval solely because a prior colonoscopy was normal; the cited prevention recommendations retain 1- to 2-year surveillance. nice org uk+1nice org uk[PDF] national institute for health and care - NICECDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
For a carrier who develops colorectal cancer, involve colorectal surgery in operative planning because risk of metachronous colorectal cancer and the extent of colectomy are relevant Lynch-specific considerations. The LancetThe LancetThe Lancet Specialty Collections: Gastroenterology
Risk Reduction
Address gynecologic risk directly and individualize extracolonic surveillance
Gynecologic prevention requires proactive counseling because screening is not reliably protective.
For carriers with a uterus and ovaries, discuss risk-reducing hysterectomy with bilateral salpingo-oophorectomy after childbearing is complete. In Lynch syndrome, prophylactic surgery has evidence of preventing endometrial and ovarian cancer and remains the most definitive risk-reducing option. NEJM+2NEJMProphylactic Surgery to Reduce the Risk of Gynecologic Cancers in the Lynch Syndrome | New England Journal of MedicineNatureLynch Syndrome and Gynecological Cancer Prevention | Cancer Genetics | Oncology and Carcinogenesis | Health sciences | Topics | Nature IndexNatureRisk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report | Genetics in Medicine
Do not present transvaginal ultrasound and endometrial sampling as equivalent substitutes for surgery. Annual transvaginal ultrasound and endometrial sampling have variable sensitivity and adherence, and public-health guidance emphasizes that no simple, reliable screening test exists for gynecologic cancers in Lynch syndrome. Nature+1NatureLynch Syndrome and Gynecological Cancer Prevention | Cancer Genetics | Oncology and Carcinogenesis | Health sciences | Topics | Nature IndexCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
Until definitive surgery, instruct patients to report abnormal uterine bleeding and other gynecologic cancer symptoms promptly rather than waiting for a surveillance interval. Symptom-triggered evaluation is particularly important because endometrial cancer is a major Lynch-associated malignancy. PubMed+1PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
For extracolonic disease, make surveillance and symptom review gene- and family-history directed rather than applying a uniform battery of low-yield tests. Consider upper gastrointestinal evaluation in patients whose pedigree or clinical context suggests gastric cancer risk, and review hematuria or urinary tract symptoms carefully in MSH2 carriers because urinary tract cancer risk is increased in that subgroup. ScienceDirect+2ScienceDirectClinical Factors Associated With Gastric Cancer in Individuals With Lynch Syndrome - ScienceDirectScienceDirectUrinary Tract Cancer in Lynch Syndrome; Increased Risk in Carriers of MSH2 Mutations - ScienceDirectCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
Before bilateral salpingo-oophorectomy, document menopausal status, reproductive goals, and the consequences of surgical menopause. NEJM+1NEJMProphylactic Surgery to Reduce the Risk of Gynecologic Cancers in the Lynch Syndrome | New England Journal of MedicineNatureLynch Syndrome and Gynecological Cancer Prevention | Cancer Genetics | Oncology and Carcinogenesis | Health sciences | Topics | Nature Index
For patients deferring surgery, establish a gynecologic follow-up plan and reinforce symptom-triggered assessment; neither surveillance nor symptom review eliminates ovarian cancer risk. Nature+1NatureLynch Syndrome and Gynecological Cancer Prevention | Cancer Genetics | Oncology and Carcinogenesis | Health sciences | Topics | Nature IndexCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
Inspect for and document sebaceous neoplasms or keratoacanthomas, which can occur in the Muir-Torre phenotype of Lynch syndrome. PubMed+1PubMedHereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI BookshelfCDCManaging Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC
References
- Cancer Risk with the Lynch Syndrome PMS2 Gene | NEJM Clinician — clinician.nejm.org · clinician.nejm.org
- Identification and Survival of Carriers of Mutations in DNA Mismatch ... — www.nejm.org · www.nejm.org
- Prophylactic Surgery to Reduce the Risk of Gynecologic Cancers in ... — www.nejm.org · www.nejm.org
- Environmental and Heritable Factors in the Causation of Cancer — www.nejm.org · www.nejm.org
- Prophylactic Surgery to Reduce the Risk of Gynecologic Cancers in the Lynch Syndrome | New England Journal of Medicine — www.nejm.org · www.nejm.org
- Incidence of non-colorectal/endometrial malignancies in individuals ... — www.thelancet.com · www.thelancet.com
- The Lancet Specialty Collections: Gastroenterology — www.thelancet.com · www.thelancet.com
- Lynch Syndrome and Gynecological Cancer Prevention | Cancer Genetics | Oncology and Carcinogenesis | Health sciences | Topics | Nature Index — www.nature.com · www.nature.com
- Risk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report | Genetics in Medicine — www.nature.com · www.nature.com
- Screening for Colorectal Cancer: U.S. Preventive Services Task ... — www.acpjournals.org · www.acpjournals.org
- Clinical Factors Associated With Gastric Cancer in Individuals With Lynch Syndrome - ScienceDirect — www.sciencedirect.com · www.sciencedirect.com
- Urinary Tract Cancer in Lynch Syndrome; Increased Risk in Carriers of MSH2 Mutations - ScienceDirect — www.sciencedirect.com · www.sciencedirect.com
- Impact of genetic testing on endometrial cancer risk-reducing practices in women at risk for Lynch syndrome - ScienceDirect — www.sciencedirect.com · www.sciencedirect.com
- The Clinical Features of Ovarian Cancer in Hereditary Nonpolyposis Colorectal Cancer - ScienceDirect — www.sciencedirect.com · www.sciencedirect.com
- [PDF] national institute for health and care - NICE — www.nice.org.uk · www.nice.org.uk
- Hereditary Nonpolyposis Colon Cancer (Lynch Syndrome) - StatPearls - NCBI Bookshelf — www.ncbi.nlm.nih.gov · www.ncbi.nlm.nih.gov
- Managing Risk for Cancers Related to Lynch Syndrome | Hereditary Colorectal (Colon) Cancer | CDC — www.cdc.gov · www.cdc.gov
- Tumour MLH1 promoter region methylation testing is an effective pre-screen for Lynch Syndrome (HNPCC) - PMC — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- Performance of PREMM5, clinical criteria, and immunohistochemistry for MMR proteins in genetic risk assessment of Mexican patients with colorectal cancer — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- Lynch Syndrome - GeneReviews® - NCBI Bookshelf — www.ncbi.nlm.nih.gov · www.ncbi.nlm.nih.gov
- Diagnosis of Lynch Syndrome and Strategies to Distinguish Lynch-Related Tumors from Sporadic MSI/dMMR Tumors — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- Genetic Testing for Lynch Syndrome, an Inherited Cancer of the Bowel, Endometrium, and Ovary — pmc.ncbi.nlm.nih.gov · pmc.ncbi.nlm.nih.gov
- Genetics of Colorectal Cancer (PDQ®) - PDQ Cancer Information Summaries - NCBI Bookshelf — www.ncbi.nlm.nih.gov · www.ncbi.nlm.nih.gov
- A Review of Hereditary Colorectal Cancers - StatPearls - NCBI Bookshelf — www.ncbi.nlm.nih.gov · www.ncbi.nlm.nih.gov